New article available!

We’re excited to share that our latest paper is now published in Computer Methods and Programs in Biomedicine Update: “Including environmental factors into Multiple Sclerosis relapse prediction models: A comparative study.”

In this work, we investigate how environmental factors, such as air pollution, can contribute to predicting relapses in Multiple Sclerosis (MS). We developed a predictive framework combining longitudinal clinical data with environmental information to forecast relapse occurrence one week ahead, using data from 814 individuals.

The framework explores a range of Machine Learning and Deep Learning approaches, different feature selection strategies, and alternative combinations of clinical and environmental features. Among the evaluated configurations, a Random Forest classifier combined with Backward Feature Selection achieved the best performance, with an Area Under the ROC Curve (AUC) of 0.869 (95% CI: 0.833–0.898). Particulate matter (PM10) and nitrogen dioxide (NO2) also emerged as informative predictors in certain settings.

These findings highlight the potential of integrating longitudinal clinical information and environmental exposures to improve MS relapse prediction. We hope this work will contribute to the development of more accurate predictive models and support further research into the relationship between environmental factors and disease activity.

Congratulations to Elena Marinello, Erica Tavazzi, Enrico Longato, Barbara Di Camillo and all other authors!

The paper is available at: https://doi.org/10.1016/j.cmpbup.2026.100272

🏆 Celebrating Award-Winning Research on Multilayer Networks at the MAQC Society Annual Meeting!

We’re excited to share that Matteo Baldan and Elena Marinello were awarded 1st and 3rd place, respectively, in the poster session at the MAQC Society Annual Meeting! 🥳👏

Both projects explored the potential of #MultilayerNetworks in biomedical research, highlighting how these approaches can help us represent and analyze the complexity of biological systems from complementary perspectives.

Matteo presented muxvizpy, a Python library developed to support the analysis and visualization of multilayer networks. Elena presented her work on integrating two molecular data types through network topology, exploring how multilayer network approaches can support the integration of complex biological data.

A special thank you to the MAQC Society, LIGHT S.c.ar.l., and JMP for supporting the event and sponsoring the awards!

Congratulations to Matteo and Elena on this achievement! 🎓🏆

SysBioBiG partecipate at BITS 2026

🧬 Our group had a great time participating in BITS2026, the 22nd Annual Conference of the Bioinformatics Italian Society, held in Padua from May 27–29, 2026.

The conference provided an excellent opportunity to share our latest research, exchange ideas with colleagues, and connect with the vibrant Italian and international bioinformatics community.

A special highlight was the 2nd International BioHackathon, organized by our group members Giulia Cesaro and Giacomo Bruzzo in collaboration with Young BITS, CINI Young InfoLife, and ISCB RSG Italy. Bringing together talented young scientists from across Italy and Europe, the BioHackathon challenged participants to decode biological networks from omics data through collaboration, creativity, and innovation. The event showcased the enthusiasm and scientific excellence of the next generation of computational biologists.

🎤 We were also proud to see our PhD student Matteo Andriolo present our work on ArchetypalC, a scalable and high-performance C++ implementation of Archetypal Analysis for large-scale bioinformatics applications. ArchetypalC supports sparse matrices, parallel computation, and interactive visualization, enabling efficient exploration of complex biological datasets.

Our group also contributed with two additional posters:

🎤 Elena Marinello presented GRAPHIA, a pipeline for deriving patient-specific network features by weighting a shared biological interaction graph according to individual gene expression profiles.

🎤 Mikele Milia presented scTransformer, a novel framework for SingleCellTranscriptomics that incorporates prior biological knowledge into the self-attention mechanism of Transformer models.

Systems Biology and Bioinformatics Group
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